<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" ><generator uri="https://jekyllrb.com/" version="4.4.1">Jekyll</generator><link href="https://diogoribeiro7.github.io/analytics-blog-jekyll/feed/research.xml" rel="self" type="application/atom+xml" /><link href="https://diogoribeiro7.github.io/analytics-blog-jekyll/" rel="alternate" type="text/html" /><updated>2026-09-27T23:42:02+01:00</updated><id>https://diogoribeiro7.github.io/analytics-blog-jekyll/feed/research.xml</id><title type="html">DataLog | Data Science &amp;amp; Research Theme | Research</title><subtitle>DataLog is a clean and academic-inspired Jekyll theme crafted for data scientists, researchers, and technical writers who want to share reproducible analyses, research papers, tutorials, datasets, and project portfolios.</subtitle><author><name>Diogo Ribeiro</name><email>dfr@esmad.ipp.pt</email></author><entry><title type="html">Research Methodology for Open Science Workflows</title><link href="https://diogoribeiro7.github.io/analytics-blog-jekyll/research/2024/03/01/research-methodology-open-science/" rel="alternate" type="text/html" title="Research Methodology for Open Science Workflows" /><published>2024-03-01T00:00:00+00:00</published><updated>2024-03-01T00:00:00+00:00</updated><id>https://diogoribeiro7.github.io/analytics-blog-jekyll/research/2024/03/01/research-methodology-open-science</id><content type="html" xml:base="https://diogoribeiro7.github.io/analytics-blog-jekyll/research/2024/03/01/research-methodology-open-science/"><![CDATA[<h2 id="define-research-questions">Define research questions</h2>

<ol>
  <li>Document hypotheses, constructs, and expected contributions.</li>
  <li>Pre-register protocols on OSF or institutional repositories.</li>
  <li>Align study design with ethical review outcomes and consent forms.</li>
</ol>

<h2 id="data-management-plan">Data management plan</h2>

<ul>
  <li>Store raw data in encrypted, access-controlled buckets.</li>
  <li>Publish anonymized derivatives with clear licensing on Zenodo.</li>
  <li>Version datasets and metadata using <a href="https://www.datalad.org/">DataLad</a>.</li>
</ul>

<h2 id="analysis-workflow">Analysis workflow</h2>

<div class="language-bash highlighter-rouge"><div class="highlight"><pre class="highlight" tabindex="0"><code><table class="rouge-table"><tbody><tr><td class="rouge-gutter gl"><pre class="lineno">1
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</pre></td><td class="rouge-code"><pre><span class="c"># Create an isolated environment</span>
mamba <span class="nb">env </span>create <span class="nt">-f</span> environment.yml

<span class="c"># Execute notebooks in a controlled order</span>
papermill pipelines/analysis.ipynb output/analysis.ipynb <span class="nt">-p</span> seed 123

<span class="c"># Validate results</span>
pytest tests/statistics <span class="nt">--maxfail</span><span class="o">=</span>1
</pre></td></tr></tbody></table></code></pre></div></div>

<h2 id="documentation">Documentation</h2>

<ul>
  <li>Maintain a living README describing objectives, dependencies, and contacts.</li>
  <li>Generate API docs for custom tooling with <code class="language-plaintext highlighter-rouge">sphinx-build</code>.</li>
  <li>Provide narrative summaries in the repository wiki for non-technical audiences.</li>
</ul>

<h2 id="dissemination">Dissemination</h2>

<ol>
  <li>Publish preprints on arXiv and deposit supplementary code in GitHub releases.</li>
  <li>Submit replication packages to the <a href="/analytics-blog-jekyll/datasets/">DataLog datasets hub</a>.</li>
  <li>Track citations and altmetrics through ORCID, Google Scholar, and ResearchGate.</li>
</ol>

<p>Adopt the reproducibility checklist to ensure each milestone—data, code,
documentation, and publications—meets open science expectations.</p>]]></content><author><name>Diogo Ribeiro</name></author><category term="research" /><category term="methodology" /><category term="open-science" /><category term="reproducibility" /><summary type="html"><![CDATA[Outline study design, data management, analysis, and dissemination practices that align with open science principles and reproducibility checklists.]]></summary></entry></feed>